Release Notes - SEEK - Version 1.4.0

New Feature

[OPSK-906] - project-specific defaults (sharing, licensing) set by project's admin
[OPSK-1254] - Allow site-wide default license to be specified

Improvement

[OPSK-255] - Upgrade to Rails 4
[OPSK-354] - better to switch the arrow direction after closing the box
[OPSK-743] - Use an better calendar for date & time selection
[OPSK-972] - acts_as_annotatable and Seek::Tagging required
[OPSK-1151] - samples not shown on organism page
[OPSK-1196] - Improve person autocompleter thing
[OPSK-1213] - Include Events in the ISA graph
[OPSK-1214] - More descriptive tab titles
[OPSK-1232] - Shown as both a creator and contributor for an Assay
[OPSK-1233] - Cannot create a sample type with controlled vocab (Rails 4)
[OPSK-1243] - Store secret_key_base in filestore rather than using env variable
[OPSK-1253] - Long project lists are not displayd nicely in asset listing
[OPSK-1258] - Import datacite gem into main SEEK
[OPSK-1259] - JWS Online needs to know whether the model is constraint based or not
[OPSK-1273] - Rename owner_id to contributor_id for Assay
[OPSK-1274] - Show SEEK ID for Project and Person, and as a URI

Bug

[OPSK-573] - Stack level too deep when doing pubmed queries in development mode
[OPSK-1041] - URLs to the fairdomhub don't seem to be recognised as webpages
[OPSK-1195] - Sharing table should not show "download" column for non-downloadable (ISA) things
[OPSK-1201] - "Upload new version" button is hidden from non-managers
[OPSK-1217] - Unit order field needs renaming
[OPSK-1220] - Incorrect default permissions when selecting "Add a Study" for an investigation
[OPSK-1221] - No project permissions when creating an Assay
[OPSK-1222] - Clicking on the centre of the permissions matrix cells doesn't work.
[OPSK-1223] - New assay based on this one doesn't select the organism
[OPSK-1224] - Preview permissions doesn't make sense and is worded misleadingly
[OPSK-1225] - Preview of data file results breaks the drag and drop of favourite search
[OPSK-1227] - Error uploading avatars
[OPSK-1229] - Cannot set default sharing defaults for a project
[OPSK-1230] - Clicking "show x more" on the ISA graph doesn't work
[OPSK-1236] - Project selector doesn't revert to 'Select a project...'
[OPSK-1237] - Presentation title box is large
[OPSK-1238] - Auth table consistency stats don't display
[OPSK-1239] - Error when attempting to do an external search
[OPSK-1241] - Problem with local solr search
[OPSK-1246] - Incorrect string value: '\xE2\x97\x8F Wh...' for column 'description' when creating an event
[OPSK-1248] - Incorrectly sending error emails for ActionController::UnknownFormat
[OPSK-1250] - Store openbis metadata cache in filestore/, not tmp/
[OPSK-1251] - Problem with publications with the DOI registered as a full URL
[OPSK-1263] - organism page/ alphabetical order - missing letters
[OPSK-1268] - (Show All) contributor pop-up displays avatars in a column
[OPSK-1271] - Pagination broken
[OPSK-1275] - Prevent invalid URLs being added, both for new items and versions
[OPSK-1279] - ISA Graph boxes are often too small for the text
[OPSK-1280] - Autocomplete for creators and attributions isn't restricted to people
[OPSK-1281] - RDF for assets doesn't include creators
[OPSK-1282] - study does not load the correct default sharing policy for project
[OPSK-1286] - "Download" permission column missing from default policy form
[OPSK-1289] - User menu expands too wide when you are a member of a project with a long name

Task

[OPSK-1242] - FAIRDOMHUb model types are out of sync
[OPSK-1245] - Investigate error email about missing sprockets when running AuthLookupJob
[OPSK-1255] - Merge datacite gem into SEEK code
[OPSK-1257] - Test the asset housekeeper behaviour
[OPSK-1260] - Error when trying to download JERM things when the server has gone
[OPSK-1261] - Investigate loading of ontologies in OWL format without having to convert to RDFXML
[OPSK-1265] - fairdomhub does not set content-length under some circumstances
[OPSK-1266] - Large file downloads take a while to start on fairdomhub