FAIRDOM-SEEK user documentation
Note that FAIRDOM-SEEK instances are highly customisable. Functionality such as e.g. the ISA structure, ISA-JSON compliant
experiments and the different asset types need to be enabled by an instance admin.
Therefore, some functionality described in this general user guide might not be available on your local instance.
Please contact your local instance admin for more information.
Profile
- Registering in SEEK
- Logging into SEEK
- Managing your account
- Editing your profile
- Favourites: drag and drop your favourite searches.
Yellow pages
(aliases: Directory)
- Browsing content
- Creating and managing your own Programmes
- Creating a Project
- Joining a Project
- Project Dashboard
- Viewing Project in Experiment View
- Specialist user roles and their capabilities
Specialist user roles
Capabilities
- Assign people to Project roles
- Flag when a person becomes inactive in a Project
- Create Organisms
- Create Profiles
- Create Institutions
- Add and remove people from a Project
Experiments
- Generating the ISA structure
- ISA-JSON compliant experiment
- Making an Investigation, Study or Assay citable
Assets
- Adding assets (data, models, SOPs, publications) to SEEK
- Data Files
- Model
- SOPs
- Publications
- Collections
- Document
- Workflow
- File template
- Creating new asset versions
Samples
General attributes and links
- Title
- Description
- Projects
- Investigation details
- Study
- Biological Problem Addressed
- Assay Type
- Experimental assays and Modelling analysis
- Technology Type
- Organisms
- Experimentalists
- Attributions
- Creators
- Tags
- Discussion channel
- Licenses
- Sharing
Activities
- Presentation
- Events
Integrations
- Using SEEK with openBIS
- Using Copasi in SEEK
- Experiment view (or Single page)
- Compliance with ISA-JSON schemas